PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0339060.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 972aa MW: 107166 Da PI: 5.9915

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0339060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.7e-28	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++kdAAk++gvc+T+LKriCR++GI+RWP+Rki+++ Lj3g3v0339060.1 599 AEKNVSLSVLQQHFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.404	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-22	865	957	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-23	871	953	No hit	No description
PROSITE profile	PS51745	20.035	874	956	IPR000270	PB1 domain
SMART	SM00666	4.7E-22	874	956	IPR000270	PB1 domain
CDD	cd06407	2.83E-30	875	955	No hit	No description
Pfam	PF00564	3.4E-17	877	955	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MEYPFSPKGG ELGYWQSPSA QFGGSISSDN GISNSISDDM PNSFSELLNF DSYAGWFTGP 60 SVTDQIFANE LPSFASVSYP LSDGFNLAEQ NSGQFFTTGV CGNSSNLESS STHGERVVCQ 120 QMDTLLGFLD ETNDANTLNS KQKINDTLQQ FSTFEEGNYT ISRPPGPSLD ERMLRALSFF 180 KESAGGGILA QVWVPLEHGG QVILSTSEQP YLLDQMLAGY REVSRTFKFP AEGKPGGFSG 240 LPGRVFVSKV PEWTSNVGYY SKNEYLRVEH ARNYKVRGTI AFPIFDTHSE LPCCAVLELV 300 TTKEMSDFDR ELEVVCHALQ LVNLRTTMPL RIFPECYSNN KRAALAEIVD VLKSVCHAHR 360 LPLALTWIPC CYTEGPKGEA MRIQIKEGHS SSGEKVLLCI EESACYVTDR LMEGFVRACI 420 EHPLEEGKGI AGKALQSNHP FFYPDVKEYD ISEYPLVHHA RKCNLSAAVA IRLRSTHTND 480 DDYILEFFLP VNMRGSSEQQ LLLDNLSGTM QRICRSLRTV SDVESSRIES THMGFENKNL 540 PSFSPLSREN SQIPLINANQ DSVQKSLKAS RLRNKGSKPP YNQVSNGSRR QVEKNRGTAE 600 KNVSLSVLQQ HFSGSLKDAA KSIGVCPTTL KRICRHHGIS RWPSRKINKV NSSLKKIQTV 660 LDSVQGVEGS LKFDPSVGAF VAGGSTIQGI DTHKSLLFPE KSTIRDPRPI TQDAVSVPAV 720 PCGESEKSAI KLEGKLKKTN ASLVDCCEDS KSMAMDDRSS HSSSLWTKAQ GSSEQASLGS 780 DLAKRDKWVL NNDGLRVENL KCNTVGQSSG SFTDDEMGID VDNDEVVELN HPTCSSLTGS 840 SNGSSPMIHG SSSSSQSFEN QSKGKSTTVD RGSKIIVKAT YRKDIIRFKF DPSAGCFKLY 900 EEVAARFKLQ NGTFQLKYLD DEEEWVMLVS DSDLQECVDI LDDIGTRSVR FLVRDLPCVS 960 EAVSTEAAHS EL

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MEYPFSPKGG ELGYWQSPSA QFGGSISSDN GISNSISDDM PNSFSELLNF DSYAGWFTGP  60
SVTDQIFANE LPSFASVSYP LSDGFNLAEQ NSGQFFTTGV CGNSSNLESS STHGERVVCQ  120
QMDTLLGFLD ETNDANTLNS KQKINDTLQQ FSTFEEGNYT ISRPPGPSLD ERMLRALSFF  180
KESAGGGILA QVWVPLEHGG QVILSTSEQP YLLDQMLAGY REVSRTFKFP AEGKPGGFSG  240
LPGRVFVSKV PEWTSNVGYY SKNEYLRVEH ARNYKVRGTI AFPIFDTHSE LPCCAVLELV  300
TTKEMSDFDR ELEVVCHALQ LVNLRTTMPL RIFPECYSNN KRAALAEIVD VLKSVCHAHR  360
LPLALTWIPC CYTEGPKGEA MRIQIKEGHS SSGEKVLLCI EESACYVTDR LMEGFVRACI  420
EHPLEEGKGI AGKALQSNHP FFYPDVKEYD ISEYPLVHHA RKCNLSAAVA IRLRSTHTND  480
DDYILEFFLP VNMRGSSEQQ LLLDNLSGTM QRICRSLRTV SDVESSRIES THMGFENKNL  540
PSFSPLSREN SQIPLINANQ DSVQKSLKAS RLRNKGSKPP YNQVSNGSRR QVEKNRGTAE  600
KNVSLSVLQQ HFSGSLKDAA KSIGVCPTTL KRICRHHGIS RWPSRKINKV NSSLKKIQTV  660
LDSVQGVEGS LKFDPSVGAF VAGGSTIQGI DTHKSLLFPE KSTIRDPRPI TQDAVSVPAV  720
PCGESEKSAI KLEGKLKKTN ASLVDCCEDS KSMAMDDRSS HSSSLWTKAQ GSSEQASLGS  780
DLAKRDKWVL NNDGLRVENL KCNTVGQSSG SFTDDEMGID VDNDEVVELN HPTCSSLTGS  840
SNGSSPMIHG SSSSSQSFEN QSKGKSTTVD RGSKIIVKAT YRKDIIRFKF DPSAGCFKLY  900
EEVAARFKLQ NGTFQLKYLD DEEEWVMLVS DSDLQECVDI LDDIGTRSVR FLVRDLPCVS  960
EAVSTEAAHS EL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11028	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0339060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ579911	0.0	AJ579911.1 Lotus corniculatus var. japonicus mRNA for NIN-like protein 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020223286.1	0.0	protein NLP8
TrEMBL	Q7X9C0	0.0	Q7X9C0_LOTJA; NIN-like protein 2
STRING	GLYMA15G03225.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Schauser L,Wieloch W,Stougaard J Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851]