PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0370510.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 137aa    MW: 15305.5 Da    PI: 9.6564
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0370510.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16.1e-1142100563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l se+
  Lj3g3v0370510.3  42 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTTGLNSEN 100
                      9**********************************************999988888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1538102IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.94440103IPR004827Basic-leucine zipper domain
PfamPF001706.2E-1042100IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.2E-104298No hitNo description
SuperFamilySSF579599.14E-124294No hitNo description
CDDcd147031.90E-194392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDGSTSIKPE MLVSGSDEMS GVDSKKAMSA AKLAELALID PKRAKRIWAN RQSAARSKER  60
KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTTGLNSEN SELKLRLQTM EQQVHLQDAL  120
NDALKEEIQH LKILAGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.225156e-74protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0370510.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486898.15e-87probable transcription factor PosF21
RefseqXP_004486899.15e-87probable transcription factor PosF21
RefseqXP_004486900.15e-87probable transcription factor PosF21
SwissprotQ040881e-71POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2Z6LS223e-86A0A2Z6LS22_TRISU; Uncharacterized protein
STRINGXP_004486898.12e-86(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.17e-85bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]