PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0397200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 187aa    MW: 20832.6 Da    PI: 7.8568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0397200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.9e-44191191100
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+C+++ Cv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da++s+vyeA+ar+r+PvyG+vg i++lqqq++ l+++
  Lj3g3v0397200.1  19 PCAACKLLRRRCTAQsCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVRSMVYEANARVRNPVYGCVGAISSLQQQVDVLHTQ 112
                      7***********9766****************************************************************************** PP

           DUF260  94 lallkee 100
                      lal+++e
  Lj3g3v0397200.1 113 LALAQAE 119
                      **99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.15118120IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-4319117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQLEEMKKGG RKQGELPSPC AACKLLRRRC TAQSCVFAPY FPADEPQKFA NVHKVFGASN  60
VNKMLQELPE HQRGDAVRSM VYEANARVRN PVYGCVGAIS SLQQQVDVLH TQLALAQAEV  120
VHLRMHQVSS SRDDDQYKHV VHATSNSSSE NLSSPSRRLI MSSQSKSPFS IDMDIDQVEI  180
GESLWSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-461812110112LOB family transfactor Ramosa2.1
5ly0_B5e-461812110112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.13440.0cell culture| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0397200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063660.0AP006366.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT35C03, TM0176a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019424969.11e-89PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE93e-66LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A4P1QQH63e-88A0A4P1QQH6_LUPAN; Uncharacterized protein
STRINGGLYMA08G17990.12e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-67LOB domain-containing protein 4