PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0429470.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SBP

Protein Properties

Length: 187aa MW: 21290.8 Da PI: 9.4006

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0429470.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.3	4.6e-43	67	143	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Lj3g3v0429470.1 67 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNP 143 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-36	59	128	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.778	64	141	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.23E-40	65	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.9E-32	67	140	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEARSIERKR TLMMEKVRKN KTVEEDMENE VEEEDETGGG DVIFTEEEKK KGRRGSSGGG 60 GVSPPSCQAE RCGADLTDAK RYHRRHKVCE FHSKAPVVVV AGLRQRFCQQ CSRFHDLAEF 120 DEAKRSCRRR LAGHNERRRK SNPEASNEGS KGHLHPKETT QCRIADERGR VQMNLPGSSG 180 YKSFNIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-38	55	140	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0429470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010406	0.0	AP010406.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT41F22, TM1776b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020239326.1	1e-88	squamosa promoter-binding protein 1
Swissprot	Q38740	4e-43	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A371FIT5	4e-88	A0A371FIT5_MUCPR; Squamosa promoter-binding-like protein 4 (Fragment)
STRING	GLYMA12G27330.1	2e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-42	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]