PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0463690.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 234aa MW: 26797.3 Da PI: 9.7318

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0463690.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	178	232	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rkR +++keq Lee F+ +++++ +++ L k+l+L rq+ vWFqNrRa+ k Lj3g3v0463690.1 178 RKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTK 232 89***************************************************98 PP
2	HD-ZIP_I/II	80.6	2.5e-26	178	234	1	57
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktk 57 +k++rlskeq ++LEesF+ +++L+p++K +l ++L+l+prq++vWFqnrRARtk+k Lj3g3v0463690.1 178 RKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTKLK 234 5899***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-17	163	228	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-17	168	232	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	174	234	IPR001356	Homeobox domain
SMART	SM00389	2.3E-10	176	234	IPR001356	Homeobox domain
CDD	cd00086	7.64E-14	178	232	No hit	No description
Pfam	PF00046	3.4E-15	178	232	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLPSRQPPIL ISPNSLPLAT CIFCLCPVRK KVIMELGLSL GDNSRPFSFM EEPREASNQS 60 GLQFNTTLSI GPVITKQIDQ QQEQELLTVQ RNKHKSDSTT EDQNHEATNE SLLCPSLKAN 120 NKRDILPHFS SGGTSRGFDM NMPAEDEAEE EAALSSSPNM FRRKGRRSDE DENRGRTRKR 180 LRLSKEQFSF LEESFKDHNT LNPKQKIALG KQLHLHPRQI EVWFQNRRAR TKLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0463690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009825	0.0	AP009825.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT13N17, TM0436a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019451579.1	2e-57	PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBL	A0A1J7HWQ9	4e-56	A0A1J7HWQ9_LUPAN; Uncharacterized protein
STRING	XP_007149086.1	3e-46	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-29	homeobox from Arabidopsis thaliana