PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0509780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 278aa    MW: 30326.1 Da    PI: 6.0455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0509780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1895145256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +++ge
  Lj3g3v0509780.1  95 TYRGVRMRN-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAAIAIKGE 145
                      69****998.**********843...6**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2295153IPR016177DNA-binding domain
SMARTSM003803.3E-3695158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3295153IPR001471AP2/ERF domain
PROSITE profilePS5103223.05195152IPR001471AP2/ERF domain
PfamPF008472.2E-1395145IPR001471AP2/ERF domain
PRINTSPR003672.3E-1096107IPR001471AP2/ERF domain
CDDcd000184.96E-3296154No hitNo description
PRINTSPR003672.3E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGKRINMGNG AESNFPAPST TSTTIITETK TSSTHSSSSS SSTITSPTSS SNSDSLNNST  60
TSQNMKTGKG SKECKKRQRS DESESNSNIN SKHPTYRGVR MRNWGKWVCE IREPRKKSRI  120
WLGTYPTAEM AARAHDVAAI AIKGESAFLN FPELAQELPR PATTSPKDIQ AAAAKAANTD  180
YKHCEDGSEP SQREEQTSIS STLSMENCNT REDQASIVSI SQESSNSPSA NDDAAFFDLP  240
DLFSDGNHGL CSYSSSWQLC AVNSGLFRLE ESVFWENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1984152372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0509780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225088.17e-90ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-61ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A371HXZ51e-97A0A371HXZ5_MUCPR; Ethylene-responsive transcription factor ERF034 (Fragment)
STRINGGLYMA03G27050.11e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]