PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0719980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 234aa    MW: 26358.7 Da    PI: 9.8099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0719980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.1e-10111152351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+  + eeAa ++++a+ 
  Lj3g3v0719980.1 111 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVASQEEAAHLYDRAAF 152
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-4110167IPR001471AP2/ERF domain
PfamPF008471.8E-4110153IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-7111155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-6113161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGDNSFV TPLPLYCENL AGDENSSQHG KPKRQSEQAV LSDIASVLDS  60
NTIVKDESGS SNASGSSSSK EQPSQQSIEP PIKRRKRHSR KPIHNQEPCL MRGVYFKNMK  120
WQAAIKVDKK QIHLGTVASQ EEAAHLYDRA AFMCGREPNF ELPEEEKREL RKFKWEEFLA  180
MTRQAITSKK HKGRHSPGPR NRIEEPSLHI GDSKSKQVAN DFSGSGYAEQ ETAI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.213910.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0719980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444108.11e-110ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627868.11e-110ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627869.11e-110ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627870.11e-110ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A072TX661e-109A0A072TX66_MEDTR; Ethylene response factor
STRINGXP_004510251.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.24e-34ERF family protein