PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0821320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 152aa    MW: 17112.2 Da    PI: 7.8034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0821320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS108.21.1e-33614676222
             GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167
                      eel + +lf++  P+lk+++++  +aI +a++    +H+iD+++s+ +QW+ L+q L  ++  ++p  l+iTg+++    +ke le+++  L  
  Lj3g3v0821320.1   6 EELVVKNLFFQFYPFLKIAYVISSHAIAKAMK---VIHVIDLSASEAAQWIYLMQRLKLKDhqKKPLLLKITGIHE----KKEVLEQMAIHLGV 92 
                      67888999*********************995...8**********************9997455559********....9************* PP

             GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                       A+el+++++fn+ ++++le+l+le++ v++gE la+++vlqlh+ll+ + s+++
  Lj3g3v0821320.1  93 AAQELNLHLQFNA-IVSSLENLDLERFPVEKGEPLAISSVLQLHSLLATDDSMAN 146
                      *************.7999*****************************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.4111152IPR005202Transcription factor GRAS
PfamPF035143.9E-316146IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVLSPEELVV KNLFFQFYPF LKIAYVISSH AIAKAMKVIH VIDLSASEAA QWIYLMQRLK  60
LKDHQKKPLL LKITGIHEKK EVLEQMAIHL GVAAQELNLH LQFNAIVSSL ENLDLERFPV  120
EKGEPLAISS VLQLHSLLAT DDSMANCKGK PT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0821320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149008.19e-57hypothetical protein PHAVU_005G032800g
SwissprotQ9LPR83e-37SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A371DZB95e-60A0A371DZB9_MUCPR; Scarecrow-like protein 3 (Fragment)
STRINGXP_007149008.13e-56(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-39scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]