PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0965510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 309aa    MW: 35123.4 Da    PI: 9.3352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0965510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.91e-49211503128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pGfrFhPtdeelv++yL++k+++k++++ e ik++diyk++PwdLp ++v++ +eke yf++kr +ky+++ r+nr+t sg+Wkatg dk+v+s
  Lj3g3v0965510.1  21 PGFRFHPTDEELVSFYLRRKLDNKPISI-ELIKQIDIYKHDPWDLPkATVSTgGEKEGYFYCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS 113
                      9***************************.89***************544444367799************************************ PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++e vglkktLv+y+g+a kg+ktdW+mhe+rl
  Lj3g3v0965510.1 114 HggeGHECVGLKKTLVYYRGSAGKGTKTDWMMHEFRL 150
                      96665666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5318186IPR003441NAC domain
PROSITE profilePS5100551.64519186IPR003441NAC domain
PfamPF023653.8E-2421150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVANEGMSKD NGHVEDEVPL PGFRFHPTDE ELVSFYLRRK LDNKPISIEL IKQIDIYKHD  60
PWDLPKATVS TGGEKEGYFY CKRGRKYRNS VRPNRVTGSG FWKATGIDKP VYSHGGEGHE  120
CVGLKKTLVY YRGSAGKGTK TDWMMHEFRL PNTADTINTK LPNAKNYVDH TAQEAEIWTL  180
CRIFKRNVSQ RKHTPELRLL GAKRQCVHDK SSRSMMSSAE FNTNQETYIN FGASLGYYQD  240
GQKPTISNYS SSDQRNNFHG GQLRSPTVVQ QAQVNAASSN FWMNLAMSTD HFFTSDNWDE  300
LGSVVKFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-462119219171NO APICAL MERISTEM PROTEIN
1ut4_B3e-462119219171NO APICAL MERISTEM PROTEIN
1ut7_A3e-462119219171NO APICAL MERISTEM PROTEIN
1ut7_B3e-462119219171NO APICAL MERISTEM PROTEIN
3swm_A2e-4661928174NAC domain-containing protein 19
3swm_B2e-4661928174NAC domain-containing protein 19
3swm_C2e-4661928174NAC domain-containing protein 19
3swm_D2e-4661928174NAC domain-containing protein 19
3swp_A2e-4661928174NAC domain-containing protein 19
3swp_B2e-4661928174NAC domain-containing protein 19
3swp_C2e-4661928174NAC domain-containing protein 19
3swp_D2e-4661928174NAC domain-containing protein 19
4dul_A3e-462119219171NAC domain-containing protein 19
4dul_B3e-462119219171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0965510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396680.0BT139668.1 Lotus japonicus clone JCVI-FLLj-11J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342991.11e-161transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK558e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A371F1W11e-151A0A371F1W1_MUCPR; Transcription factor JUNGBRUNNEN 1 (Fragment)
STRINGGLYMA15G40950.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-89NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]