PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1075070.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 698aa    MW: 76580.6 Da    PI: 8.1114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1075070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24114215199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + 
  Lj3g3v1075070.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RA 203
                      89****************************986445444..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Lj3g3v1075070.1 204 ENGDLCVGIRRA 215
                      88999****997 PP
2Auxin_resp113.51.9e-37285367283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      +  a ++++FevvY+Prast+eF++k++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Lj3g3v1075070.1 285 MALAGSNQAFEVVYYPRASTPEFCIKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 367
                      5667899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-38106217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-29109217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-22113214No hitNo description
PfamPF023621.7E-22114215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183114216IPR003340B3 DNA binding domain
SMARTSM010192.2E-23114216IPR003340B3 DNA binding domain
PfamPF065072.4E-32285367IPR010525Auxin response factor
PROSITE profilePS5174518.971585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MKEADRSSLD PQLWHACAGG MVQMPPVNSK VFYFPQGHAE HAQCSVDFAA SLRIPPLILC  60
RVAAVKFSAD PETDEVFAKM RLVPLRNSEL DHEDGGDGAS DGNATEGSEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSSFVNQK KLVAGDSVVF LRAENGDLCV GIRRAKRGIG GGAEVPSGWS SGAGAGNCGL  240
GPYGAFSVFL REEGKLLRNG CGGGNSSPGG VGRPKVSGES VREAMALAGS NQAFEVVYYP  300
RASTPEFCIK TSAVKAAMRI QWCSGMRFKM PFETEDSSRI SWFMGTIASV QVVDPIRWPN  360
SPWRLLQVTW DEPDLLHNVK RVSPWLVELV SNMSTIHHLT PFSPPRKKLR FPPHPDFPLD  420
IQFPLPAFSG NPLGPSSPLC CLSDNAPAGI QGARHAQIGI SLSDIHLHNK LQLGVLPTNI  480
TNHDHKSKES LSCLLTMGNS QKSLEKSDDD VKRHQFWLFG KPILTEQQIS RRRASSDDDN  540
VLLSQNCNSP KKEKWFFGDS QIQSSPEKSS TTSSGEFSWQ LGLDTGHCKV FLESEDVGRT  600
LDLSRVGSYE ELYRRLANMF GMERSELLSH VLYRDSTGAV KHTGEEPFSD FMKTAKRLTI  660
LTDSAGSKDT RRVLITGTRN AERGLDASNK TGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79938851388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.48371e-157floral bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1075070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096490.0AP009649.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT10E18, TM0035, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935762.10.0auxin response factor 18
RefseqXP_015935763.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445BWE80.0A0A445BWE8_ARAHY; Auxin response factor
STRINGAES675070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]