PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1145960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 219aa    MW: 25215.7 Da    PI: 9.0655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1145960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.2e-28171441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      l pG++F+Ptde lv +yLkkk+ +++l++ ++i+ +d++++ePw Lp    k    +e++++f+ +  +  +  +   r++ sg W+   k+k
  Lj3g3v1145960.1  17 LLPGYKFDPTDEVLVYFYLKKKAFAQPLPF-QIIPVFDVFQCEPWGLPgGdgK--IfNERKCFFYNTMGRDLE--NLDIRVAGSGEWRVIEKSK 105
                      579***************************.89***************53333..236789999999999875..5889999************ PP

              NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+   +++++g ++tL f++ +   +++t+Wvmhe+rl
  Lj3g3v1145960.1 106 DVHIPrNNKVIGKRNTLNFWEVQGACTRRTKWVMHEFRL 144
                      *999867888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-3512163IPR003441NAC domain
PROSITE profilePS5100534.43217164IPR003441NAC domain
PfamPF023651.6E-1519144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEDLIMTYED KDGSVRLLPG YKFDPTDEVL VYFYLKKKAF AQPLPFQIIP VFDVFQCEPW  60
GLPGGDGKIF NERKCFFYNT MGRDLENLDI RVAGSGEWRV IEKSKDVHIP RNNKVIGKRN  120
TLNFWEVQGA CTRRTKWVMH EFRLTLIANP SKMANWVVYR IFQNKNAKKV KNARWSDGES  180
SNSGRNARIA TTIDFNVESD SSSSSPLMAH SLSEGNEYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20101668170Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1145960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352865.12e-66NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-31NAC domain containing protein 83