PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1666020.4
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 226aa    MW: 25706.7 Da    PI: 4.4465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1666020.4genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.4e-15124223199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kv t+sd+   + l+lp  ++++h  ++ +   ++l++++gr++  +l+  +++g+    + ++k W++Fvk+n+Lk gD+v F+ d+  + 
  Lj3g3v1666020.4 124 FDKVITKSDSKGDQTLSLPMMYVRNHVRPNWQ--HVVLQTPEGRTYACELKR-RNPGEddtpCNIGKDWNKFVKENKLKRGDTVHFRPDSVANN 214
                      89************************777666..6***************65.44444479999***********************9887777 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                        +v+++r+
  Lj3g3v1666020.4 215 MIYVSIIRR 223
                      788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-15123224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17123223IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-13124223IPR003340B3 DNA binding domain
CDDcd100173.06E-12124222No hitNo description
SMARTSM010191.8E-9124224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998124224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDPVGGEFSF RLLAGNLGGL IFECVAEFLR RYGLKENHLC DFFYFGKNTF IVKILDGTLK  60
EISYGVGTSL SQPIVIDDGD EEAVDDEDPV GDDEDAEEDE EDDGIMEVSE GEEENGVNRV  120
LHPFDKVITK SDSKGDQTLS LPMMYVRNHV RPNWQHVVLQ TPEGRTYACE LKRRNPGEDD  180
TPCNIGKDWN KFVKENKLKR GDTVHFRPDS VANNMIYVSI IRRKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1666020.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061270.0AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.