PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1953520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 241aa    MW: 27724.3 Da    PI: 6.1378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1953520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.54e-2777165290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k  + rr+ra+tr gCka++++k +k+gkw++tk++++HnH+l+
  Lj3g3v1953520.1  77 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 165
                      9***************************************9999999****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2477165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MESQLDDGND GMEVSEDVGL STYEVEIHRE TYEGDPNEGC RVLESTSGGE LGVSDDHAIQ  60
EPYEGMEFES EDAAKVFYDE YARHVGFVMR VMSCRRSERD GRILARRLGC NKEGHCLNIR  120
GKLGSIRRPR ASTREGCKAM IHIKYDKSGK WVITKFVKDH NHPLVVSPRE ARQTMDEKDK  180
KIQELTAEIR IKKRLCATYQ EQLSSFMKIV EEHSDKLSVK IHHIVNNLKE FEPIEELLHQ  240
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1953520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049290.0AP004929.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT06J16, TM0083, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223879.11e-160protein FAR1-RELATED SEQUENCE 2
RefseqXP_020223880.11e-160protein FAR1-RELATED SEQUENCE 2
RefseqXP_029128871.11e-160protein FAR1-RELATED SEQUENCE 2
RefseqXP_029128872.11e-160protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A151SYH31e-158A0A151SYH3_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGGLYMA04G12273.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-105FAR1 family protein