PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1981270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24229.7 Da    PI: 10.052
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1981270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.27.7e-32959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Lj3g3v1981270.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                     79***********************************************95 PP
2K-box97.32.2e-3276165392
            K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                      +ss++ ++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++L++keL+qLe++Le+++++iRskK+e+ll++ie+ qk+  +++++++
  Lj3g3v1981270.1  76 HSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKRITDVERIQQ 165
                      5666669999***********************************************************************999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.118161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-33279IPR002100Transcription factor, MADS-box
CDDcd002652.15E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-33323IPR002100Transcription factor, MADS-box
PfamPF003197.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2384162IPR002487Transcription factor, K-box
PROSITE profilePS5129714.00687180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
NIRSTIERYK KACSDHSSTS TTTEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDALSTLT  120
VKELKQLENR LERGITRIRS KKHEMLLAEI EYFQKRITDV ERIQQVNMVS GQELNAIQAL  180
ASRNFFNPPM IEDGTSYPQQ PDKKILHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22182182Myocyte-specific enhancer factor 2B
1tqe_Q2e-22182182Myocyte-specific enhancer factor 2B
1tqe_R2e-22182182Myocyte-specific enhancer factor 2B
1tqe_S2e-22182182Myocyte-specific enhancer factor 2B
6c9l_A2e-22182182Myocyte-specific enhancer factor 2B
6c9l_B2e-22182182Myocyte-specific enhancer factor 2B
6c9l_C2e-22182182Myocyte-specific enhancer factor 2B
6c9l_D2e-22182182Myocyte-specific enhancer factor 2B
6c9l_E2e-22182182Myocyte-specific enhancer factor 2B
6c9l_F2e-22182182Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.16620.0floral bud| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1981270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7704050.0AY770405.1 Lotus corniculatus var. japonicus MADS box protein AGL11 mRNA, complete cds.
GenBankBT1451750.0BT145175.1 Lotus japonicus clone JCVI-FLLj-9C9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236130.11e-140MADS domain transporter AGL11
RefseqXP_006580912.11e-140MADS domain transporter AGL11 isoform X1
RefseqXP_006580913.11e-140MADS domain transporter AGL11 isoform X2
RefseqXP_014631604.11e-140MADS domain transporter AGL11 isoform X1
RefseqXP_027190215.11e-140agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_028238522.11e-140agamous-like MADS-box protein AGL11
RefseqXP_028238523.11e-140agamous-like MADS-box protein AGL11
RefseqXP_028238524.11e-140agamous-like MADS-box protein AGL11
SwissprotF6I4571e-124AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLQ533R81e-143Q533R8_LOTJA; MADS box protein AGL11
STRINGGLYMA06G48270.21e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Dong ZC, et al.
    Floral patterning in Lotus japonicus.
    Plant Physiol., 2005. 137(4): p. 1272-82
    [PMID:15824286]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  6. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  7. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]