PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2060630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 184aa    MW: 20819.9 Da    PI: 4.4408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2060630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11.1e-13347855
              AP2  8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++ +grW+A+I  +s    +k+ +lg++ t eeAa a+++a+ k++g
  Lj3g3v2060630.1  3 RHHHNGRWEARIGRVSG---NKYLYLGTYATQEEAAIAYDRAAIKYRG 47
                     68889******999754...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.237155IPR001471AP2/ERF domain
SMARTSM003807.1E-23261IPR001471AP2/ERF domain
CDDcd000183.52E-23257No hitNo description
SuperFamilySSF541711.57E-15357IPR016177DNA-binding domain
PfamPF008473.2E-9347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-16356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFRHHHNGRW EARIGRVSGN KYLYLGTYAT QEEAAIAYDR AAIKYRGLNA ITNFDLSRYI  60
KLLRPQTQDS NNHQDQTSNQ ELEVEFVSDE LGSTTGETAQ DDAVSTSSTI GLLLQPFKFK  120
EMLEKTSSAL APVESTTLPR RTFPEDIQTI FENEDSSIYT ENDDIIFGDL SSIAAPIFHF  180
ELDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.254110.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2060630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344774.19e-81AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-39AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A371FJW51e-74A0A371FJW5_MUCPR; AP2-like ethylene-responsive transcription factor (Fragment)
STRINGcassava4.1_021785m6e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.25e-42ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]