PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2060630.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 213aa    MW: 24002.4 Da    PI: 4.8643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2060630.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.85e-172576155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV +++ +grW+A+I  +s    +k+ +lg++ t eeAa a+++a+ k++g
  Lj3g3v2060630.2 25 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTYATQEEAAIAYDRAAIKYRG 76
                     89****99**********999754...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.51E-262586No hitNo description
PfamPF008471.9E-122576IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-182586IPR016177DNA-binding domain
PROSITE profilePS5103218.0572684IPR001471AP2/ERF domain
SMARTSM003809.4E-272690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-192685IPR001471AP2/ERF domain
PRINTSPR003675.8E-52738IPR001471AP2/ERF domain
PRINTSPR003675.8E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEGQSKEEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVSGNK YLYLGTYATQ  60
EEAAIAYDRA AIKYRGLNAI TNFDLSRYIK LLRPQTQDSN NHQDQTSNQE LEVEFVSDEL  120
GSTTGETAQD DAVSTSSTIG LLLQPFKFKE MLEKTSSALA PVESTTLPRR TFPEDIQTIF  180
ENEDSSIYTE NDDIIFGDLS SIAAPIFHFE LDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.254110.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2060630.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344774.11e-103AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-61AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A371FJW57e-97A0A371FJW5_MUCPR; AP2-like ethylene-responsive transcription factor (Fragment)
STRINGcassava4.1_021785m2e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.21e-52ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]