PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2427550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 176aa    MW: 20230.2 Da    PI: 8.3058
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2427550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.43.3e-09126146121
                      ---SS-EEEEEEE--TT-SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                      ldDgy+WrKYGqK++ g++f+
  Lj3g3v2427550.1 126 LDDGYSWRKYGQKDILGAKFT 146
                      59***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-7120146IPR003657WRKY domain
PROSITE profilePS508118.501121142IPR003657WRKY domain
SuperFamilySSF1182902.35E-6125146IPR003657WRKY domain
SMARTSM007741.2E-4126158IPR003657WRKY domain
PfamPF031064.8E-6127146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEENMKCEQV GLIGELMQGK ELTKQLCDHL ISSSSSSNVT NEVLIEKILF SYEKALTMLN  60
WKANVEDSKM SNGTMMDSHC SYDGSPRSEV LDPEVKHKNV FKKRKTMPKW TSQVRVCSGT  120
AIEGSLDDGY SWRKYGQKDI LGAKFTSYTN TFYLIHSFIV NFVVRSFSFY IYKFHL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.107180.0cell culture| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2427550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786407e-86AB378640.1 Lotus japonicus LjWRKY30 mRNA for transcription factor WRKY, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028239417.11e-67probable WRKY transcription factor 46
TrEMBLA0A445JSZ82e-66A0A445JSZ8_GLYSO; Putative WRKY transcription factor 41
STRINGGLYMA07G06320.17e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3683122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.18e-24WRKY DNA-binding protein 30