PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2454420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 189aa    MW: 20769.6 Da    PI: 7.9673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2454420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Lj3g3v2454420.1 35 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPLPEMAAKAYDVAAYCLKG 85
                     68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-123585IPR001471AP2/ERF domain
PROSITE profilePS5103223.423693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-313694IPR001471AP2/ERF domain
SMARTSM003801.7E-353699IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213694IPR016177DNA-binding domain
CDDcd000187.66E-303794No hitNo description
PRINTSPR003671.4E-123748IPR001471AP2/ERF domain
PRINTSPR003671.4E-127595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEHHLQCAAE DDVAEAAVTT AVEKSDSVRG GTRHPVYRGV RKRRWGKWVS EIREPRKKSR  60
IWLGSFPLPE MAAKAYDVAA YCLKGRKAQL NFPNEVHRLP PLPPPSSCTA RDIQAAAAKA  120
ARMMAKRASA VSPEKSVVTS DSDGSVAEDF WGEIELPELM NGSWWSSSGD ITALPEVEVP  180
PQQPFTACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-183197976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2454420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510664.15e-89ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI25e-50ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1S2YVN61e-87A0A1S2YVN6_CICAR; ethylene-responsive transcription factor ERF023-like
STRINGXP_004510664.12e-88(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.17e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]