PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2466510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 645aa    MW: 71704.9 Da    PI: 6.511
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2466510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.8e-23130230198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + + 
  Lj3g3v2466510.1 130 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAANDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGEH 221
                      99****************************9555566679************************************************..4489 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      ++l+v+v+r
  Lj3g3v2466510.1 222 GQLRVGVRR 230
                      999****98 PP
2Auxin_resp101.11.4e-33256335183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++alk+++svGmRfkm+fe+eds+err+sGt+vgv d+++  W nS+WrsLk
  Lj3g3v2466510.1 256 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEALKNNFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSQ-GWLNSQWRSLK 335
                      689***************6..9**********************************************887.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-41121259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-40121245IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-18128230No hitNo description
PfamPF023622.6E-21130230IPR003340B3 DNA binding domain
SMARTSM010192.0E-19130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491130232IPR003340B3 DNA binding domain
PfamPF065071.1E-31256335IPR010525Auxin response factor
PfamPF023093.4E-5575614IPR033389AUX/IAA domain
PROSITE profilePS5174521.808578645IPR000270PB1 domain
SuperFamilySSF542772.01E-9579644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAHLECSLRG QGSSQPGKGL KDDDLYRELW RLCAGPLVDV PQTGDRVFYF PQGHMEQLQA  60
STNQELNQEI PHFNLPSKIF CRVVNIQLLA EQDTDEVYAC VALLPESDQT EPENLDLTPS  120
EAPKDKFHSF CKILTASDTS THGGFSVLRK HATECLPPLD MSQATPTQEL AANDLHGFEW  180
KFKHIYRGQP RRHLLTTGWS TFVASKRLVA GDAFVFLRGE HGQLRVGVRR LARQQSPMPS  240
SVISSQSMHL GVLATASHAV MTRTMFLVYY KPRTSQFIVG LNKYLEALKN NFSVGMRFKM  300
RFEGEDSPER RFSGTIVGVG DVSQGWLNSQ WRSLKVQWDE PATIQRPDRV SFWEVEPFMP  360
SPALNVAQPT VKGKRFRPVD ISSSGFWYQG SSQAHELTQF GGGGAEVQSK ENQIVSSLRQ  420
NDISSNPIKT SSRIWPCSPH LNVTSNFFSD PKIKGVKLQS STISSYAYVS SRPIDGPTCV  480
EDDGKKSENP LDCWLFGVNL SNNSSNGIAC LEKELGCSCP TTVPSGPNES NPAGACETER  540
VQSPDFSLSN KGQSQIISEA SPIEWQKKQA SVTVPAMRTR TKVQMQGVAV GRAIDLATLS  600
GYDNLIDEVE KLFDIKGELR LQNKWAVTFT DDENDMMLVG DDPWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-168113586355Auxin response factor 1
4ldw_A1e-168113586355Auxin response factor 1
4ldw_B1e-168113586355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2466510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334325.10.0auxin response factor 18-like isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A371GUS40.0A0A371GUS4_MUCPR; Auxin response factor (Fragment)
STRINGGLYMA16G02650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]