PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2520080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 552aa    MW: 62151.5 Da    PI: 6.3497
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2520080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.22.6e-31216320199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Lj3g3v2520080.1 216 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSASNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGDlC 309
                      89***************************955667889*************************************************6669999 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l++ ++r+
  Lj3g3v2520080.1 310 RHRLYIDWRRR 320
                      99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-41206322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29213320IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-26214303No hitNo description
PROSITE profilePS5086314.029216321IPR003340B3 DNA binding domain
SMARTSM010192.6E-22216321IPR003340B3 DNA binding domain
PfamPF023627.8E-29216320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MELIQEEAVK GYSDSREEEE EEEEEEEEEE AGEEGIITTT REEEEEEEEE ESSSKHHCPF  60
SSPSNFSLSS SSPSITDYNN THHLHHHNHH VMNIPSQNSW LGMTHDDPHH SPEANTATES  120
HNSSSGLGFL LHQDGASASA PTTSNFTTNH TTKQLDFMEL SLGNNQNLSD EPNFQQQQQQ  180
GSLSASAPPP LYGHASGGAS SSANQQQQPI EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK  240
YFPLDSASNE KGLLLNFEDR NGKLWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS  300
FQRGVGDLCR HRLYIDWRRR PDHHLPDPSS AALFTPFFLP PNHHHQPHLS QYSIRWGGAN  360
SRFYSPPQPP RHHLHHDPLQ QQQLNYNHHM YQHHHHPFHP YHELNSGSGS IYYLRSAPSM  420
SIADHQTLAR QQQQHQEGGG ISSNIAPMII DSVPVGHHHH HHHHQHGGSA GISSSTSSSN  480
TAAKRLRLFG VNMECASSSS SSLPSPSLPQ NLRVPHEDST ISQSSARFGI GDLQRGEASV  540
LFDLDPSLQY RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-642113213114B3 domain-containing transcription factor NGA1
5os9_B1e-642113213114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.90150.0floral bud| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2520080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097700.0AP009770.1 Lotus japonicus genomic DNA, clone: LjT15D16, TM1935, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334900.11e-156B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_027334901.11e-156B3 domain-containing transcription factor NGA1-like isoform X1
TrEMBLA0A1S3VT451e-149A0A1S3VT45_VIGRR; B3 domain-containing transcription factor NGA1 isoform X1
STRINGAES850001e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-66B3 family protein