PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2575860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 383aa    MW: 42228.4 Da    PI: 4.4423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2575860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19120169255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Lj3g3v2575860.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169
                      69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-31120178No hitNo description
Gene3DG3DSA:3.30.730.103.2E-32120178IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22120178IPR016177DNA-binding domain
PROSITE profilePS5103223.96120177IPR001471AP2/ERF domain
SMARTSM003806.7E-38120183IPR001471AP2/ERF domain
PRINTSPR003671.1E-11121132IPR001471AP2/ERF domain
PfamPF008474.2E-12121169IPR001471AP2/ERF domain
PRINTSPR003671.1E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAAGSRR VTADILWPNL KKPNSRSMLL DDDFEAGFRE FKDDSDFEEE  60
EEDDDVAQDL LAGAKGFAFS ATAAAKTKRS NSFSKGSTAA KSVESNEQAE KYASKKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGN KAKVNFPVEP  180
QLSSKRLKAN PEKQLLKGNP NSVQPKANKM FDFNDNLESY FSSMDQVEQK PLVNQYANMS  240
PFPGNGAQLS PFTASADVNA YFSSEHSSNS FDYSDLGWGE QGPKTPEISS MLSAPLEGES  300
QFVQNNLQSD SQEMLPMQDD SAKTLTEELA DIESQLRFFE NLDGTWDDAS FDSLLSGDAS  360
QDGGNPMNLW SFDDLPAVSG GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211191841379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.4260.0cell culture| floral bud| flower| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2575860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3445330.0KC344533.1 Lotus corniculatus voucher WYM 211 AP2/ERF (ERF26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334155.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_027334156.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0U1UPM50.0A0A0U1UPM5_LOTCO; AP2/ERF
STRINGXP_004510558.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-55related to AP2 2