PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2612440.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 253aa    MW: 27689.3 Da    PI: 5.8913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2612440.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-162576155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Lj3g3v2612440.1 25 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-182586IPR016177DNA-binding domain
CDDcd000181.94E-262586No hitNo description
PfamPF008471.8E-102576IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-192684IPR001471AP2/ERF domain
SMARTSM003803.6E-342690IPR001471AP2/ERF domain
PROSITE profilePS5103219.0062684IPR001471AP2/ERF domain
PRINTSPR003673.1E-52738IPR001471AP2/ERF domain
PRINTSPR003673.1E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKNMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSSTLI AGDLAKRSPK DSALVVAAPA  120
EDFNSCGSST PSQSQPPPLA ITDGEHSDEL SNMVWNANSD EQQQPQNECE NTNLLESSSS  180
QQVSPDNKNA MNPQSPKCSE GLANEFGVSG ADYGHGYFTL HGPKFDDGNN ENDHRLGNLG  240
LVNQVPMFAL WNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2612440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629696.11e-148AP2-like ethylene-responsive transcription factor AIL1
TrEMBLG7L6T81e-147G7L6T8_MEDTR; AP2 domain transcription factor
STRINGAET017421e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-58AP2 family protein