PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2887030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 156aa    MW: 17940.7 Da    PI: 4.4404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2887030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.6e-1010342247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     g+W++Ia+ m+ gR+++++k++w++ 
  Lj3g3v2887030.1 10 GRWSAIAAQMP-GRSDNEIKNHWHTN 34
                     45*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.527139IPR017930Myb domain
CDDcd001674.41E-7935No hitNo description
SuperFamilySSF466895.69E-91046IPR009057Homeodomain-like
PfamPF002495.7E-81034IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-121047IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQLKLFLCTG RWSAIAAQMP GRSDNEIKNH WHTNLKKRYQ HSSITKSQVS KPNDHSPVQE  60
TANNINGPFE TLQITQLADS SSPESSSTNM EYTNVTNNDD YNLDREVEFA FLDSDRYGDM  120
ISGNFWFEPY MLDISYAKSS ENFECFSPVF DAELWS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.90530.0floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2887030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097500.0AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348210.11e-36transcription factor MYB13-like
TrEMBLA0A371EPQ07e-36A0A371EPQ0_MUCPR; Transcription factor MYB13 (Fragment)
STRINGGLYMA06G45554.15e-33(Glycine max)
STRINGGLYMA12G11330.25e-33(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-12myb domain protein 13