PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2901830.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 73aa    MW: 8290.96 Da    PI: 4.1318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2901830.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-092766445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++++E+ l+  + ++ G + W++Ia +++ gRt++++  +w 
  Lj3g3v2901830.1 27 FSEDEEILITMVYNLVGER-WSLIAGRIP-GRTAEEIEKYWT 66
                     7888888888888888888.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.691969IPR017877Myb-like domain
SMARTSM007171.4E-62371IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-82669IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-122667IPR009057Homeodomain-like
PfamPF002491.1E-82666IPR001005SANT/Myb domain
CDDcd001678.33E-72965No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MADREHSSDN VSADSTEKSS QASNVEFSED EEILITMVYN LVGERWSLIA GRIPGRTAEE  60
IEKYWTSRYS TSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2901830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914283e-58BT091428.1 Soybean clone JCVI-FLGm-7P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351459.13e-37uncharacterized protein LOC100500494
TrEMBLA0A371EQC21e-36A0A371EQC2_MUCPR; Transcription factor CPC (Fragment)
STRINGGLYMA12G10790.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.16e-18MYB_related family protein