PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2924230.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 119aa MW: 13345.6 Da PI: 9.9131

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2924230.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	29	3.5e-09	48	89	8	49
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktie 49 + ++hTkv+ R l++ ar+F+L+ eLGf + ++tie Lj3g3v2924230.1 48 NEDRHTKVNKRESCATLPSVRVARIFQLTCELGFSSHGETIE 89 579**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-6	48	89	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MSSEKTSLKR VLSSSSSTFS TNQPKYMMSE IPLPLKATNT KLHPLKGNED RHTKVNKRES 60 CATLPSVRVA RIFQLTCELG FSSHGETIET RLPLRATYTK LILCYFAINV CCLSLPTHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2924230.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204756.1	2e-20	transcription factor PCF1
TrEMBL	A0A151R4T2	3e-18	A0A151R4T2_CAJCA; Transcription factor TCP21
STRING	GLYMA11G20201.1	8e-17	(Glycine max)
STRING	XP_007132292.1	9e-17	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	4e-11	TCP family protein