PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2926340.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

YABBY

Protein Properties

Length: 177aa MW: 20051.8 Da PI: 8.6178

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2926340.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.2	1.2e-63	6	157	5	169
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++e+vCyv+CnfCntilavsvP+++l+++vtvrCGhC++llsvnl ++ + + +++++l +ee + k +++++++t Lj3g3v2926340.2 6 MATERVCYVHCNFCNTILAVSVPHSTLLTIVTVRCGHCSNLLSVNLGAFQAFPPQDPQ-------PQKQHLSFEEPSNKDLGSSSKCHKTAAFE 92 579*****************************************998777666665.......56666777766666665555555544433 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++e pr+pp irP ekr rvPsaynrfikeeiqrika+nPdishreafs aaknWahfP+ihf Lj3g3v2926340.2 93 -----PVEREQPRIPP-IRPAEKRHRVPSAYNRFIKEEIQRIKATNPDISHREAFSSAAKNWAHFPHIHFA 157 .....45788899999.9*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.8E-68	7	157	IPR006780	YABBY protein
SuperFamily	SSF47095	9.43E-8	104	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.0E-5	109	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSMDMMATER VCYVHCNFCN TILAVSVPHS TLLTIVTVRC GHCSNLLSVN LGAFQAFPPQ 60 DPQPQKQHLS FEEPSNKDLG SSSKCHKTAA FEPVEREQPR IPPIRPAEKR HRVPSAYNRF 120 IKEEIQRIKA TNPDISHREA FSSAAKNWAH FPHIHFAKQA KLDHQGEGTE KTMNGFY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2926340.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090811	1e-164	BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027346217.1	1e-107	putative axial regulator YABBY 2
Refseq	XP_027346218.1	1e-107	putative axial regulator YABBY 2
Swissprot	Q9XFB0	6e-70	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445HP14	1e-105	A0A445HP14_GLYSO; Putative axial regulator YABBY 2 isoform B
STRING	GLYMA12G10210.3	1e-103	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-56	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]