PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2990310.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 94aa    MW: 11018.6 Da    PI: 10.8582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2990310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.53.7e-08123106128
              NAM 106 LvfykgrapkgektdWvmheyrl 128
                      +vfykg+ap+g+kt+W m+eyr+
  Lj3g3v2990310.1   1 MVFYKGKAPSGRKTKWKMNEYRA 23 
                      89*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-9148IPR003441NAC domain
PROSITE profilePS5100515.671150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MVFYKGKAPS GRKTKWKMNE YRAIQVSNNQ SSTATPQLRR EFSLCRVYVI SGSFRSFDRR  60
PLKNERVESR LVHDEAGNFP LRGTPWWCWC GRGC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2990310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455804.14e-35NAC domain-containing protein 90
SwissprotQ9FMR31e-23NAC90_ARATH; NAC domain-containing protein 90
TrEMBLB7FI492e-35B7FI49_MEDTR; Uncharacterized protein
STRINGXP_004506197.16e-33(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-26NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]