PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2994480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 109aa    MW: 12374.2 Da    PI: 8.7233
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2994480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.21.9e-13799895
            NF-YB  8 lPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                     lP + v r++k  l    +++   i kda     e +  fi ++++ a+d c++ +r+ in++d++ al +  f +++ pl++ l+++r+ ++
  Lj3g3v2994480.1  7 LPKTIVRRVVKDKLSrcsEDGdiSIHKDALLAFSESAKIFIHYISATANDICKESRRQIINAEDVFKALEETEFAEFIRPLRASLEEFRKKNA 99
                     67777888888887522233411567999999*********************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.47E-237107IPR009072Histone-fold
PfamPF008082.1E-9775IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-297107IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAEPDDLPKT IVRRVVKDKL SRCSEDGDIS IHKDALLAFS ESAKIFIHYI SATANDICKE  60
SRRQIINAED VFKALEETEF AEFIRPLRAS LEEFRKKNAG KKAAASKYK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2994480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434520.0BT143452.1 Lotus japonicus clone JCVI-FLLj-16I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214165.12e-61DNA polymerase epsilon subunit 3
TrEMBLI3SSK41e-72I3SSK4_LOTJA; Uncharacterized protein
STRINGXP_004506183.12e-60(Cicer arietinum)
STRINGGLYMA11G18960.13e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-43nuclear factor Y, subunit B11