PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2995580.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 326aa MW: 37080.2 Da PI: 7.6395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2995580.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.8e-06	159	178	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r n++ H+ Lj3g3v2995580.1 159 FVCSICSKTFNRYNNMQMHM 178 89*****************9 PP
2	zf-C2H2	12	0.00066	243	266	1	23
EEET.TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp.dCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Lj3g3v2995580.1 243 FMCRkLCGKTFAVKGDWRTHEKNC 266 78999***************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.7E-6	132	182	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.2E-5	159	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.346	159	186	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-4	159	178	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	181	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.43E-5	229	264	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	229	264	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGLMECDVED KNLCLHAPTF IEWLKPSNSS ASYLTPTPPS SSSTTRTYSS VTQKKLVQET 60 IQLFPILSGK PLKDEDHIGT QQVEVKEEKV EHVTVALHIG LPENTRGDIL EGDDDDEKMV 120 LNVKEEEPSK KTFNGCSFNQ ERRFWIPTPA QILVGPMQFV CSICSKTFNR YNNMQMHMWG 180 HGSEFRKGPD SLRGTQPAAM LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL QTHYKRKHGT 240 KPFMCRKLCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIRS FGKGHDPLLP 300 NSLDEVFEEE NECVTGSDED EVLAHA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.21665	1e-178	cell culture

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2995580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006864	0.0	AP006864.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT18I21, TM1144.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241401.1	1e-178	uncharacterized protein LOC100802773
Refseq	XP_028193091.1	1e-178	zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-117	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A445HNP6	1e-176	A0A445HNP6_GLYSO; Zinc finger protein WIP3
TrEMBL	C6TEB1	1e-176	C6TEB1_SOYBN; Uncharacterized protein
STRING	GLYMA12G09400.1	1e-177	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-112	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]