PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3033150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 205aa    MW: 22105.5 Da    PI: 9.3426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3033150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000412042123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C+++F++   L  H  +H
  Lj3g3v3033150.1 20 YECKTCNRTFPSFQALGGHRASH 42
                     99**********99999998887 PP
2zf-C2H2140.00015108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Lj3g3v3033150.1 108 HECSICGSEFTSGQALGGHMRRH 130
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-91942No hitNo description
SMARTSM003550.0522042IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-132044IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3052047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-9103130No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4106130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512108135IPR007087Zinc finger, C2H2
PfamPF139121.3E-11108132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MFAEIATATN PNTKAGFFIY ECKTCNRTFP SFQALGGHRA SHKRPKVTVE EKKLSPPLPP  60
PPSSQPHQLV VNYGGFEEAG LPRGGGPSIS LQLGRSGFNG NNNKAKIHEC SICGSEFTSG  120
QALGGHMRRH RASXXXXXXS APAETNSNAI TSTTVVARPP RNILQLDLNL PAPPEDDLRE  180
SKFQFPATQK SMVLSAAPAL VDCHY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.57791e-107flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3033150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104571e-159AP010457.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT04O19, TM1002, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347012.15e-77zinc finger protein ZAT5-like
SwissprotQ681X41e-50ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A4D6LHV68e-73A0A4D6LHV6_VIGUN; Uncharacterized protein
STRINGGLYMA11G19830.13e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-49C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]