PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3085460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 683aa    MW: 75045.1 Da    PI: 7.5581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3085460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-24106207199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF   + 
  Lj3g3v3085460.1 106 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFL--RA 195
                      89****************************996555555..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Lj3g3v3085460.1 196 ENGELYVGIRRA 207
                      9999******97 PP
2Auxin_resp117.11.5e-38278361183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Prast+eF++k++ v++a++v+++ GmRfkm fetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
  Lj3g3v3085460.1 278 AVTLAASNQPFEVVYYPRASTPEFCIKASAVKAAMRVQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPVRWPNSPWRLLQ 361
                      678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-3799209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29100207IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-21105206No hitNo description
PfamPF023623.1E-22106207IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14106208IPR003340B3 DNA binding domain
SMARTSM010194.1E-22106208IPR003340B3 DNA binding domain
PfamPF065072.3E-33278361IPR010525Auxin response factor
PROSITE profilePS5174515.305580660IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKEGEKSLDP QLWHACAGGM VQMPQVNSRV FYFPQGHAEH AHTNVDLRGS LPPFILCNVA  60
AVKFMADPET DEVFAKMRLV PLRNSELGLG EEGGEVLENS EKPASFAKTL TQSDANNGGG  120
FSVPRYCAET IFPRLDYAAE PPVQTVVAKD VHGELWKFRH IYRGTPRRHL LTTGWSTFVN  180
QKKLVAGDSV VFLRAENGEL YVGIRRAKKG IGGGGGGGSE VSSGWSSASG SGNCGIGPYG  240
AFSFFLREEN KTLRNGCVGG GGDLSGRARV RPEAVIEAVT LAASNQPFEV VYYPRASTPE  300
FCIKASAVKA AMRVQWCSGM RFKMPFETED SSRISWFMGT IASVQVVDPV RWPNSPWRLL  360
QVNWDEPDLL QNVKRVSPWL VELVSNMPAI HFTPFSPPRK KLRFPQHPDF PLDVRFPTPT  420
FSGNQLGPNV PLICLSDNAP ASIQGARHAQ IGISLSDIHL SNKLQLGLFP TNIQLHSGIS  480
NGNMTNHDES KESLSCLLTM GKSIKSLEKS VDVKKHQFLL FGQPILTEQQ ISNSCSREVL  540
SHNNSGKNSL AVNEDKEKCF FDSPGKASSA EFSWQLGLDT GHCKVFLESE DVGRSLDLSC  600
LGSYEELYMR LANLFGLERS EMLNHVLYRD ATGAVKQTGE EPFSDFMKTA KRLTILTDSG  660
SKSIRAWITG TRNGEHGLDA SNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-81838251388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.202612e-62pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3085460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346655.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A371ELJ50.0A0A371ELJ5_MUCPR; Auxin response factor (Fragment)
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]