PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3086110.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 204aa    MW: 23683.5 Da    PI: 9.9249
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3086110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.61.8e-1574164999
            NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      + e+ ++ k h +P+ ri+ ++k ++   ++s+ea   + ka e f+ ++t  ++ +a + ++++l  + +a +v++   +dfl d vp++
  Lj3g3v3086110.1  74 EEEDIEEAKSHVFPMNRIRTMIKGEDPEARVSTEAILAINKAAEKFLEQFTQEAYTRAVQDRKKSLSYNHLAHVVSKQRRYDFLSDFVPEK 164
                      467788999**************9998999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.59E-1752157IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.9E-2386163IPR009072Histone-fold
PfamPF008081.2E-1386148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASSNNSKSQ NNKKIKTEKE RAIIDKKNKK PKKEKEEESK ITKNKKLKLT NGNGNGNSKK  60
HHRQQEQKHE EEDEEEDIEE AKSHVFPMNR IRTMIKGEDP EARVSTEAIL AINKAAEKFL  120
EQFTQEAYTR AVQDRKKSLS YNHLAHVVSK QRRYDFLSDF VPEKVRAEDA LREISSRGNG  180
GVLHQQLIAT ESTEDADLKH YLRW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.136900.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3086110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049590.0AP004959.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT21I12, TM0136, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606405.11e-57DNA polymerase epsilon subunit 4
TrEMBLG7JPE73e-56G7JPE7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGAES886024e-57(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-26nuclear factor Y, subunit C10