PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3155130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 208aa    MW: 23681.6 Da    PI: 4.645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3155130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T++E+ l  +++ ++G++ W++Iar+++ gRt++++k++w++++
  Lj3g3v3155130.1  2 TPQEERLVTELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                     9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.88E-12143No hitNo description
SMARTSM007173.8E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129424.286147IPR017930Myb domain
SuperFamilySSF466895.69E-12248IPR009057Homeodomain-like
PfamPF002499.3E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTPQEERLVT ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKKAQE KEKKRAAEAA  60
SSSSPADSSS CESSLTSNNH GVDSHASKEA GEEDSFYDTG GAHNMNNVHV IGEDHQDGGD  120
DQGYSMDDIW KDIAMSEDEN FNLQPVFDGY SEEGCNFSYP PLFSPSWDYS SDPLWVMDDE  180
ERKMLFPLSH DHQSLSFYGD QGRTFLTG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260890.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3155130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635350.0JN863535.1 Lotus japonicus R2R3MYB transcription factor (MYB59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606617.12e-68transcription factor MYB59 isoform X2
TrEMBLI3RSY51e-105I3RSY5_LOTJA; R2R3MYB transcription factor (Fragment)
STRINGAES888122e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.28e-41myb domain protein 48