PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3166200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 139aa    MW: 15256.8 Da    PI: 9.5062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3166200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000837698123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++Cp+Cg  F     L  H+r+H
  Lj3g3v3166200.1 76 HSCPICGIEFAIGQALGGHMRKH 98
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-92548IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-82598No hitNo description
PROSITE profilePS501579.2452552IPR007087Zinc finger, C2H2
SMARTSM003551.32547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
PfamPF139121.9E-776100IPR007087Zinc finger, C2H2
PROSITE profilePS501578.70476103IPR007087Zinc finger, C2H2
SMARTSM003550.27698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEGDMANCLM LLSKVGESCN NGDGFVCKTC NREFLSFQAL GGHRASHKRL KLMAAGLSSF  60
SSRPLQGLRE KKQKMHSCPI CGIEFAIGQA LGGHMRKHRA AMNDGGAKRS DHLCLDLNLT  120
PYENDLNLIL RTPPLSKKI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3166200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1491620.0BT149162.1 Lotus japonicus clone JCVI-FLLj-5I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347803.18e-54zinc finger protein ZAT12-like
SwissprotQ9LX854e-28ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLI3T8W42e-96I3T8W4_LOTJA; Uncharacterized protein
STRINGGLYMA11G15140.12e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-35C2H2 family protein