PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3211130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 210aa    MW: 24502.4 Da    PI: 8.3141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3211130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS215.43e-662208102306
             GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      I +a++++e++H+iDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g   +e+leetg+rLa+++++++vpfe+n+++++++e++++e+
  Lj3g3v3211130.1   2 IKKAAAKAETLHVIDFGIFYGFQWPLLIKFLSERDGGPPKLRITGIEYPLPGfrPTERLEETGRRLANYCKRFNVPFEYNAVASRNWETIRVED 95 
                      889999*******************************************99999***************************9999********* PP

             GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                      L++k++E +aVn++l+ ++llde+ +++s+rd+vL+l+++++P+++ ++  + + n++ F++rf eal y+sa++d  ++ +pr++++r+++Er
  Lj3g3v3211130.1  96 LKIKSNEFVAVNCMLRFKNLLDETIEMNSPRDAVLHLIRRINPDIFAHSIINGSFNAPFFVTRFREALFYFSAVYDICDSVIPRDNQWRMMIER 189
                      ********************************************************************************************** PP

             GRAS 288 ellgreivnvvacegaerr 306
                      e++gr+++nv+aceg er+
  Lj3g3v3211130.1 190 EMVGRNAMNVIACEGLERI 208
                      ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.3121210IPR005202Transcription factor GRAS
PfamPF035141.0E-632208IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MIKKAAAKAE TLHVIDFGIF YGFQWPLLIK FLSERDGGPP KLRITGIEYP LPGFRPTERL  60
EETGRRLANY CKRFNVPFEY NAVASRNWET IRVEDLKIKS NEFVAVNCML RFKNLLDETI  120
EMNSPRDAVL HLIRRINPDI FAHSIINGSF NAPFFVTRFR EALFYFSAVY DICDSVIPRD  180
NQWRMMIERE MVGRNAMNVI ACEGLERIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-272209101306GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3211130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132055.11e-125hypothetical protein PHAVU_011G063200g
RefseqXP_007132056.11e-123hypothetical protein PHAVU_011G063200g
SwissprotP0C8847e-94SCL34_ARATH; Scarecrow-like protein 34
TrEMBLV7AET11e-124V7AET1_PHAVU; Uncharacterized protein
STRINGXP_007132056.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.13e-96GRAS family protein