PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3212150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 88aa    MW: 10638.4 Da    PI: 11.1196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3212150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS59.56.9e-19287284373
             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++Ere++gr+++nv+aceg er+ r et+++W+ r ++aGFk+ pl++k +++ ++ lrk + d    +  ++++++ Wk+r L   + W
  Lj3g3v3212150.1   2 MIEREMVGRNAMNVIACEGLERIDRPETYKQWQVRNTRAGFKQFPLNQKLVSKFRTKLRKWHHD----DFVNNWMLQSWKGRILSGSTIW 87 
                      79************************************************************77....5679**************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.662172IPR005202Transcription factor GRAS
PfamPF035142.4E-16287IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MMIEREMVGR NAMNVIACEG LERIDRPETY KQWQVRNTRA GFKQFPLNQK LVSKFRTKLR  60
KWHHDDFVNN WMLQSWKGRI LSGSTIWV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3212150.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505853.19e-44scarecrow-like protein 34
SwissprotQ3EDH04e-30SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A1S2YJS72e-42A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRINGXP_004505853.13e-43(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14801813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.12e-32GRAS family protein