PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3248370.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 225aa MW: 24657.7 Da PI: 8.4866

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3248370.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.5e-13	161	206	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +Av+YIk+Lq Lj3g3v3248370.1 161 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 206 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.939	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-16	158	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.72E-13	159	210	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-16	160	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	161	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGYAAIRGMG AFGAGSNKTE EAAFSPSARL QNPPNYSSGL LSPRAEIGSK SNTQNNPEAE 60 GFAETRGNEF PGFPWDDSAV MSENLSGQKR FRDDDVKPFS GLNAAESQNE TGGQAPAPLA 120 HHMSLPNTSA EMAAIEKFLK FSDSVPCKIR AKRGCATHPR SIAERVRRTK ISERMRKLQD 180 LVPNMDKQTN TSDMLDLAVD YIKDLQMQVQ TLSDCRAKCT CKHKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3248370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027341342.1	1e-127	transcription factor bHLH122-like isoform X2
Refseq	XP_027341343.1	1e-127	transcription factor bHLH122-like isoform X2
Refseq	XP_027354536.1	1e-126	transcription factor bHLH122-like isoform X1
Swissprot	Q66GR3	1e-59	BH130_ARATH; Transcription factor bHLH130
TrEMBL	V7AEH4	1e-125	V7AEH4_PHAVU; Uncharacterized protein
STRING	XP_007131988.1	1e-125	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]