PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3315950.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 381aa    MW: 44520.7 Da    PI: 4.368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3315950.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.7e-1217100999
                      HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + l   r+ +p +f+ ++ +  +  s+ ++l  +sg +W+v++   k ++++++++GW +   +n +k+ D ++F+++g+++f  +v++f++
  Lj3g3v3315950.1  17 SELHPERMEVPPEFL-KYlE--EDFSTNVILIGSSGYRWQVTI--FK-DEKVYMQNGWPQVLADNSVKSQDLLLFTYNGQNRF--LVQFFSS 100
                      566678999******.6635..458999***************..44.457899***********************998888..9999986 PP
2B354.71.9e-17166258199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv++p+    s r+ +p+ f+    ++  e+++l+l++++g++Wevk       +++++ +GW +F ++n Lk+ Dfv F+++g + f  ++
  Lj3g3v3315950.1 166 FFKVFLPKQ--HSERMLIPNAFMMLAPQQGWEPRDLILKNLHGKVWEVKA--LPINSQMYFDDGWMQFREDNCLKAADFVFFTHVGGNVF--NF 253
                      889995555..55669******9666656668999***************..777777889**********************9998888..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k++++
  Lj3g3v3315950.1 254 KICES 258
                      99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-148103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-149103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.7029101IPR003340B3 DNA binding domain
CDDcd100171.73E-9999No hitNo description
SMARTSM010199.1E-511101IPR003340B3 DNA binding domain
PfamPF023623.6E-917100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18160261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18161261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956164259IPR003340B3 DNA binding domain
CDDcd100173.36E-15164256No hitNo description
SMARTSM010191.9E-13166259IPR003340B3 DNA binding domain
PfamPF023622.2E-14166258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MADTTPIYPA FFRIFLSELH PERMEVPPEF LKYLEEDFST NVILIGSSGY RWQVTIFKDE  60
KVYMQNGWPQ VLADNSVKSQ DLLLFTYNGQ NRFLVQFFSS NGCERQCTKK IKHEEAATPI  120
LEQKRKRGRP RKEKGLPTNF VNQMKECHIS KECKRNSQPA NKYPDFFKVF LPKQHSERML  180
IPNAFMMLAP QQGWEPRDLI LKNLHGKVWE VKALPINSQM YFDDGWMQFR EDNCLKAADF  240
VFFTHVGGNV FNFKICESTG CEKTKVNVSG EQEKERDDVI ELDEEEKERD DVIVLDEEEE  300
EEDDDDDDDD DDEDEDEEEG EEEEEEEECK ATMRRKSPGK ACKVNLSREK GGSSGTKAED  360
ADIDVEMYIQ PDNPYFINKP W
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3315950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097100.0AP009710.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT23H01, TM1768, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-15B3 family protein