PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3336250.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 374aa    MW: 43197.2 Da    PI: 4.4618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3336250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-1022971799
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +p +f+ ++ +  +  s  ++l  +sg +W+v++   k+ +++++++GW +   +n +k+++ ++F+++g+++f  +v++f++
  Lj3g3v3336250.1 22 KVPPEFL-KYlE--EDFSANVILIGSSGYQWQVTI--FKG-EKVYMQNGWPQVLTDNSVKSKELLLFTYNGQNRF--LVQFFSS 97
                     5788998.5535..448899***************..554.56899***********************998888..9999986 PP
2B347.82.5e-15163255199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv++p+    s r+ +p+ f++   ++  e+++l+l++++g++Wevk      +++ ++  GWk+F ++n Lk+  fv +++++++ef  ++
  Lj3g3v3336250.1 163 FFKVFLPER--HSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKA--IPIDNQLYFDVGWKQFREDNCLKAANFVFLTHIESNEF--KF 250
                      889995555..5556899*****777666778999***************..999999*************************9987777..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k++++
  Lj3g3v3336250.1 251 KICES 255
                      99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0761698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-1219100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1119103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-72297IPR003340B3 DNA binding domain
CDDcd100172.14E-62396No hitNo description
PROSITE profilePS5086310.8282398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16157258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-16159258IPR015300DNA-binding pseudobarrel domain
CDDcd100177.72E-12161253No hitNo description
PROSITE profilePS5086311.152161256IPR003340B3 DNA binding domain
SMARTSM010191.6E-9163256IPR003340B3 DNA binding domain
PfamPF023623.4E-13163255IPR003340B3 DNA binding domain
SuperFamilySSF483714.32E-5272315IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYLHVTHGIL DKLVFCWHNL QKVPPEFLKY LEEDFSANVI LIGSSGYQWQ VTIFKGEKVY  60
MQNGWPQVLT DNSVKSKELL LFTYNGQNRF LVQFFSSNGC ERQCTKTIKH EEAATPILVQ  120
KRKRGRPRKE KGLPTNFVNQ MKECHISKEC ERASQPAKKY PDFFKVFLPE RHSERMLMPN  180
AFVKLARQQG WEPRDLILKN SHGKVWEVKA IPIDNQLYFD VGWKQFREDN CLKAANFVFL  240
THIESNEFKF KICESTGCER TKVNGRKEQD MVREDAVELD EEEEEDEDDD DYVVDEDEDE  300
DDDENEDEDV DVDVDVGVGV GVGVGVGVGV GVGVDDDNED EDEEDTEEDE EEVKATKRRQ  360
SPAKACKVNL NSKF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3336250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097100.0AP009710.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT23H01, TM1768, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.19e-10B3 family protein