PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3557030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 228aa    MW: 25025.1 Da    PI: 7.3054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3557030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS52.31.1e-1681157379
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                       lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL++r+++s+ ++y+ l +++ + ++s++ ++
  Lj3g3v3557030.1  81 GLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQSRVVSSCLGTYSPLMAKSVTLTQSQRIIF 157
                      58**********************************************************99888887666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.88153228IPR005202Transcription factor GRAS
PfamPF035143.8E-1481157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLQSLIPRSP LNSSKPTTMK TKRDDGGGGS DSAVDEHSFK RRNFSGEKAI EEGEAAHEED  60
QVLQPASSSG EEESTGLKLL GLLLQCAECV AMDNLDFAND LLPEIAELSS PFGTSPERVG  120
AYFAQALQSR VVSSCLGTYS PLMAKSVTLT QSQRIIFALP RQSSDLPGAR RRGSRPHHRP  180
RHHAGASMAG TVPHPRLASE EDPFVEDHRV RIHREKTRRF RELAWASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-16851592599Protein SCARECROW
5b3h_A1e-16851592498Protein SCARECROW
5b3h_D1e-16851592498Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.220250.0cell culture| floral bud| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3557030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952735.12e-59scarecrow-like protein 23
RefseqXP_016187881.12e-59scarecrow-like protein 23
RefseqXP_025642717.12e-59scarecrow-like protein 23
RefseqXP_025686836.12e-59scarecrow-like protein 23
TrEMBLA0A445A7K95e-58A0A445A7K9_ARAHY; Uncharacterized protein
TrEMBLA0A445E2L44e-58A0A445E2L4_ARAHY; Uncharacterized protein
STRINGXP_004505671.11e-54(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-21GRAS family protein