PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3579320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 445aa    MW: 50228.8 Da    PI: 6.0313
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3579320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS464.94.6e-142394421374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+aayfteALa r+++++++l +al++++     +see+ ++klf+e++P+lk++
  Lj3g3v3579320.1  39 LIHLLLTCANHVAAGSLENANTTLEQISMLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRMI--LVSEEILVQKLFFELFPFLKVG 130
                      689*************************************************************998886..6********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI ea+ege+++HiiD+++ +  QW+aLlq L++Rpegpp+lRiTgv++    +ke l +++++L + Ae+l++pf+fn+ v+++le+
  Lj3g3v3579320.1 131 FILTNQAIIEAMEGEKMIHIIDLNAAESSQWIALLQILSARPEGPPHLRITGVNQ----KKEVLDQIAHKLIEEAEKLDIPFQFNP-VVSKLEN 219
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.......................................desvsleserdevLklvkslsPkvvvvve 243
                      l++++Lrvk+gEala++++lqlh+ll                                       ++s s++   +++L+++++lsPkv+vv+e
  Lj3g3v3579320.1 220 LDFDKLRVKTGEALAISSILQLHSLLawddeavqrkspllsrsskdmvngynpspdstssspaslANSNSMNM--ESFLNALWGLSPKVMVVTE 311
                      ***********************************************************99877644444444..78***************** PP

             GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                      q+++hn+++++er+le+l+ y+alfd+le+++pr+s erikvE++ +g+ei+n++aceg+er+erhe+lekW +r+++aGF++vpls++ + +a
  Lj3g3v3579320.1 312 QDSNHNGSTLMERLLESLYSYAALFDCLESTVPRTSLERIKVEKMHFGEEIKNIIACEGFERKERHEKLEKWFQRFDSAGFGNVPLSYFGMLKA 405
                      ********************************************************************************************** PP

             GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++ll+ ++ +gyr+ ee+g++ ++W+dr+L+s+SaWr
  Lj3g3v3579320.1 406 RRLLQSYGCEGYRMREENGCVAICWQDRSLFSISAWR 442
                      ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.92813422IPR005202Transcription factor GRAS
PfamPF035141.6E-13939442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVTSSPLPYF SMMSLSPTTL GSPNPWLREL KSEERGLYLI HLLLTCANHV AAGSLENANT  60
TLEQISMLAS PDGDTMQRIA AYFTEALADR ILKTWPGLHR ALNSTRMILV SEEILVQKLF  120
FELFPFLKVG FILTNQAIIE AMEGEKMIHI IDLNAAESSQ WIALLQILSA RPEGPPHLRI  180
TGVNQKKEVL DQIAHKLIEE AEKLDIPFQF NPVVSKLENL DFDKLRVKTG EALAISSILQ  240
LHSLLAWDDE AVQRKSPLLS RSSKDMVNGY NPSPDSTSSS PASLANSNSM NMESFLNALW  300
GLSPKVMVVT EQDSNHNGST LMERLLESLY SYAALFDCLE STVPRTSLER IKVEKMHFGE  360
EIKNIIACEG FERKERHEKL EKWFQRFDSA GFGNVPLSYF GMLKARRLLQ SYGCEGYRMR  420
EENGCVAICW QDRSLFSISA WRSMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-67224411377Protein SCARECROW
5b3h_D3e-67224411377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.95680.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3579320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537745.10.0scarecrow-like protein 3 isoform X1
RefseqXP_028190169.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445I0A00.0A0A445I0A0_GLYSO; Scarecrow-like protein 3 isoform B
STRINGXP_007131568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]