PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3640270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 421aa    MW: 47778.5 Da    PI: 6.2684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3640270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.71.3e-9784201374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      lv+lL + A + +s ++  a+  L  +s+ a+p+gd+mqR+a+yf eALa  +++++  ++ k l+ s++   ++ ee  ++++f+e+ P+lk+
  Lj3g3v3640270.1   8 LVHLLKDTAVFTESCNFIDADIGLYYISQFATPEGDSMQRVATYFSEALACcQVSKNLRGVPKVLSLSTKL--STPEEQLVRNFFFELYPFLKI 99 
                      6899999******************************************9725666888888888776665..47777889999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      ++ t+NqaI ea+ +e+ + i+D+++   +QW+ L+++L +   +pp  ++++T +++    + e le++g  L+  Ae+l+ +f+fn+ v+++
  Lj3g3v3640270.1 100 AYKTTNQAIIEAMGQEKFINILDLSACDATQWIYLMKSLKEHLPDPPdvKIKVTCIHE----KYEVLEQMGLHLRLEAERLNFDFKFNA-VVST 188
                      ****************************************999888846778899999....99*************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrll...........................................desvsles.erdevLklvksls 235
                      le+l+le+L +++gE la+++vlqlh+ll                                            +++sl+  + + +L+ +++l+
  Lj3g3v3640270.1 189 LENLDLEKLPLEKGEPLAISCVLQLHSLLatsdemvrtmnyapaeasmnqyaqmlgkqnknknkinsspdsaLSPLSLSPpKMECFLNGLWKLQ 282
                      *********************************************************************9884445544445778********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                      Pkv+v++eqea+ n++++ +r+ +al++y alfd+lea++pr+  +r+ +E++llg++i+n++aceg er+er e +++W  rl+ aGF+ v++
  Lj3g3v3640270.1 283 PKVMVITEQEANVNGSTLTDRMENALQFYGALFDCLEATFPRTLVDRTLLEKMLLGKQIKNIIACEGVERKERYEVVRTWIPRLQLAGFGMVSI 376
                      ********************************************************************************************** PP

             GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      s + + qak+ll+++   gy+  +++++l+++W++rpL+s+SaW+
  Lj3g3v3640270.1 377 SPNGMIQAKTLLQNYV-GGYHTVQDKNCLFMCWEGRPLFSISAWK 420
                      **************99.89*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.3821401IPR005202Transcription factor GRAS
PfamPF035144.3E-958420IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEDKGLKLVH LLKDTAVFTE SCNFIDADIG LYYISQFATP EGDSMQRVAT YFSEALACCQ  60
VSKNLRGVPK VLSLSTKLST PEEQLVRNFF FELYPFLKIA YKTTNQAIIE AMGQEKFINI  120
LDLSACDATQ WIYLMKSLKE HLPDPPDVKI KVTCIHEKYE VLEQMGLHLR LEAERLNFDF  180
KFNAVVSTLE NLDLEKLPLE KGEPLAISCV LQLHSLLATS DEMVRTMNYA PAEASMNQYA  240
QMLGKQNKNK NKINSSPDSA LSPLSLSPPK MECFLNGLWK LQPKVMVITE QEANVNGSTL  300
TDRMENALQF YGALFDCLEA TFPRTLVDRT LLEKMLLGKQ IKNIIACEGV ERKERYEVVR  360
TWIPRLQLAG FGMVSISPNG MIQAKTLLQN YVGGYHTVQD KNCLFMCWEG RPLFSISAWK  420
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-382341934378Protein SCARECROW
5b3h_A5e-382341933377Protein SCARECROW
5b3h_D5e-382341933377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3640270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103590.0AP010359.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT33C21, TM1819, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131457.10.0hypothetical protein PHAVU_011G015000g
TrEMBLA0A371FLF10.0A0A371FLF1_MUCPR; Scarecrow-like protein 3 (Fragment)
STRINGXP_007131457.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1632579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-103scarecrow-like 3