PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3752200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 192aa    MW: 21500.9 Da    PI: 6.3971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3752200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-163583355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +gr+v+eIr p   g+++r++lg+f ++e+Aa+a++ a+  l+g
  Lj3g3v3752200.1 35 FRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFASPEMAARAYDSAAFFLKG 83
                     79***888.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-313497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-283492IPR001471AP2/ERF domain
PROSITE profilePS5103220.6663491IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-193492IPR016177DNA-binding domain
PfamPF008471.0E-93583IPR001471AP2/ERF domain
CDDcd000181.91E-273593No hitNo description
PRINTSPR003674.0E-83546IPR001471AP2/ERF domain
PRINTSPR003674.0E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSITETEEAH SHSQAGEAEN SAVASTKLKS ESRMFRGVRK RSWGRYVSEI RLPGQKTRIW  60
LGSFASPEMA ARAYDSAAFF LKGASAYLNF PELVHSLPRP LSSSRRDIQS AAAKAAALRL  120
PCSSSKTEHH DSMEKKTEEC WWEELGQHDP TTSSFHDAPL MSPLSTFGDF TWNDLVFNFN  180
DEYDGILTST LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153096168ATERF1
3gcc_A2e-153096168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3752200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097860.0AP009786.1 Lotus japonicus genomic DNA, clone: LjT28A08, TM1997, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027911710.13e-65dehydration-responsive element-binding protein 3-like
SwissprotQ391272e-32TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A4D6LJY78e-64A0A4D6LJY7_VIGUN; EREBP-like factor
STRINGGLYMA09G36840.23e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.16e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]