PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3754390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 146aa    MW: 16413.7 Da    PI: 7.0757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3754390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.67.9e-07113136629
                      HHHHHHHHHHHHHHHHHHHCTSCC CS
              HLH   6 nerErrRRdriNsafeeLrellPk 29 
                      +++Er RR ri +++ +L+el+P+
  Lj3g3v3754390.1 113 SIAERVRRTRISDRIRKLQELVPN 136
                      689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.585107146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-6109141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-4111146No hitNo description
Gene3DG3DSA:4.10.280.101.3E-5112138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MMQPDGGLSR FRSAPATWLE ALLLKDEEEL EIQEEPLTFT QLLSNAAGPG PSSSLFPSHS  60
QQYLSSPNPI THHDQEFEHG GKAASDIRMD NVLEDSVPCK LRAKRGFATH PRSIAERVRR  120
TRISDRIRKL QELVPNMDKV SLVILK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3754390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356223.14e-51transcription factor bHLH80 isoform X1
TrEMBLA0A072UJN71e-49A0A072UJN7_MEDTR; Transcription factor
STRINGGLYMA08G26110.16e-37(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-18bHLH family protein