PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3754390.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 177aa    MW: 20141.7 Da    PI: 6.2438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3754390.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12113158655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k Lq
  Lj3g3v3754390.2 113 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKFLQ 158
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17109175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-12111162No hitNo description
Gene3DG3DSA:4.10.280.102.2E-16112172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMQPDGGLSR FRSAPATWLE ALLLKDEEEL EIQEEPLTFT QLLSNAAGPG PSSSLFPSHS  60
QQYLSSPNPI THHDQEFEHG GKAASDIRMD NVLEDSVPCK LRAKRGFATH PRSIAERVRR  120
TRISDRIRKL QELVPNMDKQ TNTADMLDEA VAYVKFLQNQ IQELSEHQRR CKCMVQE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3754390.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356223.15e-79transcription factor bHLH80 isoform X1
TrEMBLI3T2V24e-73I3T2V2_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA08G26110.12e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-39bHLH family protein