PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0109410.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YB

Protein Properties

Length: 164aa MW: 18254.4 Da PI: 5.7388

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0109410.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.8	1.6e-53	21	116	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 re +r+lPianvsrimkk+lP+nakisk+aket+qec sefisf+t+easdkcq+ekrktingddl+wa++tlGfedyv++lk yl+kyr++eg Lj4g3v0109410.1 21 RELERLLPIANVSRIMKKALPGNAKISKEAKETMQECLSEFISFITAEASDKCQNEKRKTINGDDLVWAMTTLGFEDYVQALKGYLHKYRDMEG 114 7889****************************************************************************************** PP NF-YB 96 ek 97 ek Lj4g3v0109410.1 115 EK 116 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.6E-51	18	130	IPR009072	Histone-fold
SuperFamily	SSF47113	6.37E-39	24	128	IPR009072	Histone-fold
Pfam	PF00808	1.5E-27	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-18	54	72	No hit	No description
PRINTS	PR00615	1.3E-18	73	91	No hit	No description
PRINTS	PR00615	1.3E-18	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAESDKEIGG KNELTSPNGC RELERLLPIA NVSRIMKKAL PGNAKISKEA KETMQECLSE 60 FISFITAEAS DKCQNEKRKT INGDDLVWAM TTLGFEDYVQ ALKGYLHKYR DMEGEKTNYS 120 FIGRQQQNQQ GDDDAVGSGV SMPSSSTSYH HQGVMYASGN VWKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	21	111	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	21	111	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0109410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486346.1	5e-64	nuclear transcription factor Y subunit B-3-like
Refseq	XP_020230669.1	4e-64	nuclear transcription factor Y subunit B-3
Swissprot	Q75IZ7	4e-58	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A151SBC7	1e-62	A0A151SBC7_CAJCA; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A1S2XAJ8	1e-62	A0A1S2XAJ8_CICAR; nuclear transcription factor Y subunit B-3-like
STRING	XP_004486346.1	2e-63	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-59	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]