PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0119630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 125aa    MW: 14301.7 Da    PI: 4.6186
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0119630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.39.3e-1267115150
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 
                      +fY++YA+  GF  rk+  ++  r+g+i++r++vC++eg+r+e++ ++++
  Lj4g3v0119630.1  67 EFYQHYAHFKGFGARKDDVRRD-RKGNIISRQLVCNREGERHEKHLNKVS 115
                      6*****************9998.7777****************9988333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-967114IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MADVNEYFSI DLSNDGGMSE DDDSVAVADD GNGNNENSNP DRCKLIPDLT ADEIRELVFC  60
SEKDAVEFYQ HYAHFKGFGA RKDDVRRDRK GNIISRQLVC NREGERHEKH LNKVSETTRL  120
VLIYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0119630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104080.0AP010408.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31P09, TM1330, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025656959.14e-16uncharacterized protein LOC112751850
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.17e-08FAR1 family protein