PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0120440.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 151aa    MW: 17362.9 Da    PI: 10.2523
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0120440.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.8e-2213104191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      kfY++Y++  GF vrk++ ++   +g +++r++vCskeg r+++  +  ++ r +++ tr++C a+++v+ e+ +gkw+vt +e+ HnHel+p
  Lj4g3v0120440.1  13 KFYERYGQCFGFGVRKDNVYRG-PKGCVVTRQLVCSKEGARHKKYMErGDRVRAPKPITRVSCPARFRVRYERnSGKWKVTLFEKSHNHELTP 104
                      6*******************98.77779**************9998845677889****************999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2013104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGLEFDSEEE AVKFYERYGQ CFGFGVRKDN VYRGPKGCVV TRQLVCSKEG ARHKKYMERG  60
DRVRAPKPIT RVSCPARFRV RYERNSGKWK VTLFEKSHNH ELTPVDKVHL ISSFRQISES  120
DKAQINSLKI HGVRTCNIMG LMLGQKGGHE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0120440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.13e-47protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A484MMQ95e-45A0A484MMQ9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-28FAR1-related sequence 5