PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0335770.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 197aa    MW: 22196 Da    PI: 8.8044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0335770.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.72.8e-24146197151
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++t
  Lj4g3v0335770.2 146 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITT 197
                      58***************************99***************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-26131197IPR003657WRKY domain
SuperFamilySSF1182903.4E-22139197IPR003657WRKY domain
PROSITE profilePS5081123.169141197IPR003657WRKY domain
SMARTSM007742.7E-24146197IPR003657WRKY domain
PfamPF031061.5E-21147197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKDYYDLQMK FSIIQENNKR KDPQFSLSLQ DNATATSEEG PSRILEIFSK NIQRSPSLPN  60
NSANDDSMDE NELGLSLRLQ TSTSQKETEE NKEEKREQLV ASFASPPVQN NKLQRTHDLP  120
GITAHAAAAN RKARVSVRAR CEAATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV  180
RKQVQRCIDD MSILITT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18133197164WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0335770.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104170.0AP010417.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05L17, TM0337b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348425.11e-104probable WRKY transcription factor 9
TrEMBLA0A371GKQ91e-104A0A371GKQ9_MUCPR; Putative WRKY transcription factor 9 (Fragment)
STRINGXP_007159029.14e-99(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-39WRKY DNA-binding protein 9