PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0335840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 196aa    MW: 21888 Da    PI: 9.5246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0335840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.34e-14115169255
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 
                      + l+++rr++kNRe+A rsR+RK+a++ eLe  v++Le+eN +L +e +e+ ++ 
  Lj4g3v0335840.1 115 ATLQKQRRMIKNRESAARSRERKQAYTTELEAIVQQLEEENARLMEEeAERNRQR 169
                      5799***************************************986414444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-9114178IPR004827Basic-leucine zipper domain
PfamPF001701.0E-12115172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013116168IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-10118168No hitNo description
CDDcd147071.71E-16118164No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-13119174No hitNo description
PROSITE patternPS000360121136IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDDLLKSIYT PSKDIKPPTS LDDVWRDIVA AGTTAIAAEE MTLEDFLTKT GAVREEDVRG  60
LLPPPPPPPP SHFHLPPPPP SASDASSSLV TPNGVSAASV AKGKRRAIEE PVDKATLQKQ  120
RRMIKNRESA ARSRERKQAY TTELEAIVQQ LEEENARLME EEAERNRQRL KQLRECLIPI  180
VEKPKPKRKL QRSNSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0335840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104170.0AP010417.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05L17, TM0337b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346522.19e-68G-box-binding factor 4-like isoform X1
TrEMBLA0A1S3T8G21e-64A0A1S3T8G2_VIGRR; protein ABSCISIC ACID-INSENSITIVE 5 isoform X1
STRINGGLYMA08G08220.11e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-27G-box binding factor 4